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Documentation
Public reference for users and research teams exploring Protoly.

Protoly Documentation

Protoly is a structured workflow platform for experimental science. It helps teams create reproducible protocols, publish research records, and prepare selected workflows for NanoScience Lab automation review.

Typical Workflow

  1. Create a protocol or related scientific record.
  2. Add scientific context, metadata, authors, references, figures, and tables.
  3. Build the workflow in Step Builder with ordered steps, parameters, and materials.
  4. Keep the record private for collaboration, publish it, export it, or submit it for automation review.
Protocols The unified project/protocol model, content types, metadata, authors, visibility, and publication lifecycle.
Step Builder Structured workflow groups, steps, parameters, materials, references, and keyboard shortcuts.
Automation & Workflow Modules Automation requests, NanoScience Lab execution review, and supported workflow module categories.
Pineapple Protocol The structured workflow exchange layer used for workflow portability and connected execution systems.
Publishing Journal issues, review, payment, DOI, PDF generation, and public publication flow.
Events Event hosting, abstract intake, organizers, schedules, and event-linked journal issues.
Profiles & Messaging Public researcher profiles, ORCID, author identity, connections, and messaging.
Developers Current contributors maintaining the Protoly workflow, automation, and publication stack.